Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLSDFLNSGWESVLVVLGIVGVIINFLSKAGKGTEEENKKAPQPRPNLRSMH-QASRTQTTKKPEKRKVSQGTFTQNKEQDKVIAEQKAAQQKMLREIRRESDVAKGKNIIKSTSSHQKKARKLRGRLQEAIITKEILDKPVSLRKNHL
1LSL Chain:A ((1-113))
QDGGWSHWSPWSS-------------CSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARETKACKKDACPINGGWGPWSPWDICSVTCGGGVQKRSRLCNNPTPQFGGKDCVGDVTENQICNKQDC------------------------
General information:
TITO was launched using:
RESULT:
Template:
1LSL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 70205 for 621 contacts (113.1/contact) +
2D Compatibility (PS) -10681 + (NN) 5562 + (LL) 3472
1D Compatibility (HY) 1600 + (ID) 850
Total energy: 69308.0 ( 111.61 by residue)
QMean score : -0.130
(partial model without unconserved sides chains):
PDB file :
Tito_1LSL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LSL-query.scw
PDB file :
Tito_Scwrl_1LSL.pdb
: