Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLDKKIISALSYFSLFFAPVITPAIIWCTTKDKEIRHHVKW---ALLTQATFVAGIVVMILLYNNVPFSTNSADTINFLALATVFFIVFLNVSILIFNLIRGITRIVKHSDDNWARC
2HN8 Chain:A ((1-38))
-----------------------------VMPKQIVYWKQWLSLRNPILVFLKTRVLKRWRLFSKHE--------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2HN8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9082 for 148 contacts (-61.4/contact) +
2D Compatibility (PS) -3636 + (NN) -2935 + (LL) 7232
1D Compatibility (HY) 0 + (ID) 200
Total energy: -8621.0 ( -58.25 by residue)
QMean score : 0.231
(partial model without unconserved sides chains):
PDB file :
Tito_2HN8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HN8-query.scw
PDB file :
Tito_Scwrl_2HN8.pdb
: