Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRSWPDFAAFLLTILTVTWIILTWGLHISDIVPGGEKG-IW-YKLIPLFLGIISTISVFFVKEKLVKWILLGFNILLLILIYFVYHI-GEIGMF----------------------------------------
1VR8 Chain:A ((5-141))
KIHHHHHHPPEAYSLDTAIFVLETRDYRLSDVKEIDSYGDVEMKGKVAVFETEYGPVFLYVYKGEEAKKIWKKLNGRVSIRSVLDLPNMGKFSTVSNGKKIVAWWRKNWLFIVEGKNGVEEFVKHVYRVYEEMKQ
General information:
TITO was launched using:
RESULT:
Template:
1VR8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61592 for 485 contacts (-127.0/contact) +
2D Compatibility (PS) -9475 + (NN) 935 + (LL) 0
1D Compatibility (HY) -400 + (ID) 600
Total energy: -71132.0 ( -146.66 by residue)
QMean score : 0.147
(partial model without unconserved sides chains):
PDB file :
Tito_1VR8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VR8-query.scw
PDB file :
Tito_Scwrl_1VR8.pdb
: