Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LDNNQKDLNQVIRQLKEKGIVVEKTKSRKDIWKSVSSKAMPNMTLRLQ
3GK0 Chain:A ((139-160))
--GHFDAVRAACKQLADAGVRVSL------------------------
General information:
TITO was launched using:
RESULT:
Template:
3GK0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 1029 for 88 contacts (11.7/contact) +
2D Compatibility (PS) -2429 + (NN) -979 + (LL) 1836
1D Compatibility (HY) -1200 + (ID) 200
Total energy: -1943.0 ( -22.08 by residue)
QMean score : 0.860
(partial model without unconserved sides chains):
PDB file :
Tito_3GK0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GK0-query.scw
PDB file :
Tito_Scwrl_3GK0.pdb
: