Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LMVKRGDVYYADLSPVVGSEQGGIRPVLIIQNDIGNRFSPTVIVAAITAKIQKA-K--LPTHVEATRKDGFEKDSVILLEQIRTIDKQRLTDKITHLDEDLMAKVNKALEVSLGVVEF
2KMT Chain:A ((15-103))
--------------------AKTYPYFVDVQSDLLDN-LNTRLVIPLTPIELLDKKAPSHLCPTIH-I--DEGDFIMLTQQMTSVPVKILSEPVNELS-TFRNEIIAAIDFLIT----
General information:
TITO was launched using:
RESULT:
Template:
2KMT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32328 for 582 contacts (-55.5/contact) +
2D Compatibility (PS) -8709 + (NN) -260 + (LL) 1940
1D Compatibility (HY) -5200 + (ID) 650
Total energy: -45207.0 ( -77.68 by residue)
QMean score : 0.331
(partial model without unconserved sides chains):
PDB file :
Tito_2KMT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KMT-query.scw
PDB file :
Tito_Scwrl_2KMT.pdb
: