Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDNKLEFTTIDEYITQAPPETKEV--LQKIRETIKAAAPEATEKISYQMPTFYLEGNLVHFAVAKNHYGFYPASSGIAAFE--SKLGNYK--HSKGAVQFPIKEEVPYELIKEMTLFRLAENKQKAAEKLAKKKKK
1WNV Chain:A ((100-198))
-------------ITASPAVIDYVNRLEEIRDNVDGPALVAHHYVRYLGA---LSGGQVIARMMQRHYGVDPEALGFYHFEGIAKLKVYKDEYREKLNNLELSDEQREHLLKEAT---------------------
General information:
TITO was launched using:
RESULT:
Template:
1WNV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 4984 for 484 contacts (10.3/contact) +
2D Compatibility (PS) -9847 + (NN) -760 + (LL) 3328
1D Compatibility (HY) -4800 + (ID) 1450
Total energy: -8545.0 ( -17.65 by residue)
QMean score : 0.217
(partial model without unconserved sides chains):
PDB file :
Tito_1WNV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WNV-query.scw
PDB file :
Tito_Scwrl_1WNV.pdb
: