Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --VNKFMELLG--EKLMPLAAKL---GENRYLTTLRDAFMLAFPLTMFGSIAVVL-----------MNLPFWSDETK--AVLQLYLGNAQSATMSIMTVFV---VFGIGYSLSKYYKVEAIYGGAVALASFLILTPFFFNSPDGELITGALSLDRLGAKGMFIGMITGFIAAELYRFFVQRDWTIKMPAGVPPAVAKSFAALIPAILTLSIFLAINVMVQFFFHTNLHDVVYTVIQKPLVGLGSGIVPTLIALFFVQVLWFFGLHGQIIVNSVMDPIWNTLMLENLDAYKAGLPLPHIITKPFMEVFTVGMGGSGMTLAVVIALAFLMKSKQSKEIGRLALGPGIFNVNEPVLFGMPIVLNATILIPWII---APLIVTTLNYFVMAAGIVPAPTGVAVPWTVPIVING-ILATNSWLGGALQVVDFFIVLIIWYPFLKLVDRTNIARESEAAIK------- |
| 4K2M Chain:A ((1-442)) | AGMQKQVKISGKSKENMSLLKHLKGDVQGKELVIEDSIVNERWKQVLKEKIDIEHDLFNYQKNREISKVPFLPVDRLITNDEVEDILNTLTEVLPTGKFTSGPYLEQFEKVLSTYLHKRYVIATSSGTDAIMIGLLALGLNPGDEVIMPANSFSATENAVLASGGVPIYVDINPQTFCID-------PDKIEEAITPYTKFILPVHL-YGKHSDMQHIRQIANRYKLKVIEDACQGIGLTDLGKYADITTLSFNPYKNFGVCGKAGAIATD-------NEELAKKCIQFSYHGFEVNVKNKKVINFGFNSKMDNLQAAIGLERMKYLSLNNFKRLFLADRYITQLAELQNKGYIELPELSEDHVWHLFPIKVRTEDRADIMTKLNEDFGV-----QTDVYYPILSHMQKTPLVQDKYAGLQLVHTEKAHSQVLHLPLYPSFTLEEQDRVMEGLFHVIKQEIG |
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General information:
TITO was launched using:
| RESULT:
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Template: 4K2M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -436200 for 3492 contacts (-124.9/contact) +
2D Compatibility (PS) -41745 + (NN) -1430 + (LL) 1384
1D Compatibility (HY) -400 + (ID) 2350
Total energy: -480741.0 ( -137.67 by residue)
QMean score : 0.244
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