Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQASFVVIDETGIHARPATLLVQAASKYSSDVQIEYTGKKVNLKSIMGVMSLGIGKGADITIYTEGSDEKEAIEGLTEVLKKEGLAE
1KKM Chain:H ((14-100))
-AQKTFKVTADSGIHARPATVLVQTASKYDADVNLEYNGKTVNLKSIMGVMSLGIAKGAEITISASGADENDALNALEETMKSERLGE
General information:
TITO was launched using:
RESULT:
Template:
1KKM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55892 for 668 contacts (-83.7/contact) +
2D Compatibility (PS) -9522 + (NN) -3102 + (LL) 208
1D Compatibility (HY) -8000 + (ID) 2700
Total energy: -79008.0 ( -118.28 by residue)
QMean score : 0.635
(partial model without unconserved sides chains):
PDB file :
Tito_1KKM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KKM-query.scw
PDB file :
Tito_Scwrl_1KKM.pdb
: