Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKLGNDWDELLKNEFNQPYYLTLRQFLKKEYQTK-KVFPDMYDIFNALKHTAYKDVKVVILGQDPYHGPGQAHGLSFSVQQGVQIPPSLQNIYLELHNDL-NCEIPNNGYLIPWADQGVLLLNTVLTVRAGQANSHRGQGWEILTNHIIEIINQKEEPVVFLLWGSNAKEKLQLLTNPKHTAFTSVHPSPLSASRGFMGCKHFSKTNQFLEQNGVKPIDWQIPSI
2UUG Chain:A ((7-220))
-------WHDVLAEEKQQPYFLNTLQTVASERQSGVTIYPPQKDVFNAFRFTELGDVKVVILGQDPYHGPGQAHGLAFSVRPGIAIPPSLLNMYKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFTDKVISLINQHREGVVFLLWGSHAQKKGAIIDKQRHHVLKAPDPSPLSAHRGFFGCNHFVLANQWLEQRGETPIDW-----
General information:
TITO was launched using:
RESULT:
Template:
2UUG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108282 for 1693 contacts (-64.0/contact) +
2D Compatibility (PS) -22955 + (NN) -10652 + (LL) 684
1D Compatibility (HY) -20400 + (ID) 6000
Total energy: -167605.0 ( -99.00 by residue)
QMean score : 0.566
(partial model without unconserved sides chains):
PDB file :
Tito_2UUG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2UUG-query.scw
PDB file :
Tito_Scwrl_2UUG.pdb
: