Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MATNKKEIIRLLEEIATYMELKGENSFKISAFRKAAQAIELDSRSLSEIDDFTKISGIGKTTGEIIQRYLDSGECPELEELKKEVPAGLVPLLD-VPGLGGKKLSRLYHELGVVDKDTLLQEAENGHIE--ALKGFGKKSAEKMAEAVREMGERPDRYPLNDVLPIIQKVEA-YLAEIAPIETFAQAGSLRRLRETVKDLDYVI--------ATEKPE---DVQKALLAFPLITDVIGAGETKVSAVLE-------DNITISVDFRLVEKKAFATTLHHFTGSKDHNIKMRQLAKQSNEKISEY-----GVEQEDGTVRHFESEKTFFEHFKIPFLPPEVRRDGTEIERVTKDTKFLELSDIRGDLHMHTTWSDGAYAIPEMIEACIAKGYEYMVITDHGKFLRVANGLDEKRLLEQQAEIKKIAAKYPEIDVYSGVEMDILADGSLDFDDETLKQLDFVIASIHSSFQQSEEEIMKRLKTACENPYVRLIAHPTGRIVVKRKPYHVNMKELIQLAKSTGTALELNANPQRLDLNREHLEMAHAAGVPIAINTDAHDTKHLDFMSIGVRAATKAWLGKSAILNTKTAAEFKQFLQNK |
4MFF Chain:A ((5-323)) | -------ITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDI--------VLNEVKKVDSEYIATV--------CGSFRRGAESSGDMDVLLTHPSFTSES---PKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQWKYREPKDR---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4MFF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -107067 for 2041 contacts (-52.5/contact) +
2D Compatibility (PS) -30860 + (NN) -9919 + (LL) 21000
1D Compatibility (HY) -14400 + (ID) 4100
Total energy: -145346.0 ( -71.21 by residue)
QMean score : 0.422
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