Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNKKIPLRKCIITGERLPKGELLRIA--YSKDGALTIDPTGKAPG--RGFYIVKSVEACEKAKKKNA-IFHQLKMPEQESFYDELIAYVKSLEEPTNG
4CU5 Chain:A ((1-85))
------MYKHTIVYDGEVDKISATVVGWGYNDGKILICDIKDYVPGQTQNLYVV-GGGACEKISSITKEKFIMIKGNDRFDTLYKALDFINR-------
General information:
TITO was launched using:
RESULT:
Template:
4CU5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19729 for 598 contacts (-33.0/contact) +
2D Compatibility (PS) -9064 + (NN) -6368 + (LL) 668
1D Compatibility (HY) -4400 + (ID) 750
Total energy: -39643.0 ( -66.29 by residue)
QMean score : 0.446
(partial model without unconserved sides chains):
PDB file :
Tito_4CU5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CU5-query.scw
PDB file :
Tito_Scwrl_4CU5.pdb
: