Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTKSRFFSDV-AET--SSFVFAVAGADDEVVLETIRLALKQKLGKFLLFGKKEDKT------LTANESVTWIQTDTAE---------------------------AAAQGAILAVKNKEADILVKGFIP-TATLMHHVLKKENGLRTD-QLLSQIAIFDIPTY-HKPLLITDCAMNVAPKTKEKIAITENALAVAHQ-IGITNPKIALLSAVEEVTAKMPS---TLEAQEVVQHFGNQISVSGPLALDVAISKEAALHKGITDSSAGEADILIAPNIETGNALYKSLVYFAGAK-VGSAVVGAKVPIVISSRNDSPENKLASFILTVRLVEK |
| 1VMI Chain:A ((14-335)) | -----IIERCRELALRAPARVVFPDALDQRVLKAAQYLHQQGLATPILVANPFELRQFALSHGVAMDGLQVIDPHGNLAMREEFAHRWLARAGEKTPPDALEKLTDPLMFAAAMVSAGKADVCIAGNLSSTANVLRAGLR-IIGLQPGCKTLSSIFLM-LPQYSGPALGFADCSVVPQPTAAQLADIALASAETWRAITGE-EPRVAMLSFSSNGSARHPCVANVQQATEIVRERAPKLVVDGELQFDAAFVPEVAAQKAPASPLQGKANVMVFPSLEAGNIGYKIAQRLGGYRAVGPLIQGLAAPMHDLSRGCSVQEIIELALVAAVPR-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VMI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -157959 for 2447 contacts (-64.6/contact) +
2D Compatibility (PS) -29987 + (NN) -15309 + (LL) 604
1D Compatibility (HY) -7200 + (ID) 3150
Total energy: -213001.0 ( -87.05 by residue)
QMean score : 0.460
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