Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPAVIGVIMGSTSDWDTMKKACDVLDELEIAYEKKVVSAHRTPDLMFQYAEQARERGLKIIIAGAGGAAHLPGMVAAKTTLPVIGVPIKSKALNGMDSLLSIVQMPGGVPVATVAIGESGAVNAGLLAAQILSITDDAITNRLQKRRATLEETVLESSDYLG
3LP6 Chain:A ((10-157))
----VGVIMGSDSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPGMVAAATPLPVIGVPVPLGRLDGLDSLLSIVQMPAGVPVATVSIG--GAGNAGLLAVRMLGAANPQLRARIVAFQDRLADVV--------
General information:
TITO was launched using:
RESULT:
Template:
3LP6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124148 for 1238 contacts (-100.3/contact) +
2D Compatibility (PS) -15866 + (NN) -3931 + (LL) 724
1D Compatibility (HY) -15600 + (ID) 4450
Total energy: -163271.0 ( -131.88 by residue)
QMean score : 0.629
(partial model without unconserved sides chains):
PDB file :
Tito_3LP6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LP6-query.scw
PDB file :
Tito_Scwrl_3LP6.pdb
: