Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYYGTPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMPE--GIFIFLTPPDLSELKNRIIGRGTESMEVVEERMETAKKEIEM--MASYDYAVVNDVVANAVQKIKGIVETEHLKTERVIHRYKKMLEGLQ
1GKY Chain:A ((4-185))
-------IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSV-KAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHDKVIVNDDLDKAYKELKDFIFAE-------------------
General information:
TITO was launched using:
RESULT:
Template:
1GKY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53338 for 1290 contacts (-41.3/contact) +
2D Compatibility (PS) -19862 + (NN) -11800 + (LL) 2656
1D Compatibility (HY) -10800 + (ID) 3550
Total energy: -96694.0 ( -74.96 by residue)
QMean score : 0.594
(partial model without unconserved sides chains):
PDB file :
Tito_1GKY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GKY-query.scw
PDB file :
Tito_Scwrl_1GKY.pdb
: