Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKIVLLLALITVVLTVGACSDNKKETEEKANKTEEESATFLTTISTKDFKQKMADKTTGFVYVGRPTCEDCQAFQPILKK---ELKKRQPDQKMAYYNTDKASEKSRDNMIALLEKMDIDSVPTMVYLKDGKVASTYAATDEPAKLTNWMNKVSGEVSE
2DJ1 Chain:A ((12-102))
--------------------------------EVKEENGVWV--LNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSAS--------MLASKFDVSGYPTIKILKKGQ---------------------------
General information:
TITO was launched using:
RESULT:
Template:
2DJ1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21556 for 571 contacts (-37.8/contact) +
2D Compatibility (PS) -9711 + (NN) -7562 + (LL) 5452
1D Compatibility (HY) -6800 + (ID) 1350
Total energy: -41527.0 ( -72.73 by residue)
QMean score : 0.637
(partial model without unconserved sides chains):
PDB file :
Tito_2DJ1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DJ1-query.scw
PDB file :
Tito_Scwrl_2DJ1.pdb
: