Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VVKTRKEKREYEEPADYDMSSEGQDEFNNEPPMLSRSDSRRGKKKTIFRYPLLNLLIVFFLLIPIVIVIVFVTVQNMGSSNEVKTETESTVNVSDNTQSKEEKEKAKKAAEEKAAAEKAAEEKKAAAEKAEADKKKQEEDAVKAANAKKEQEAAEEKAAADKAAAEKAAAEKAEQQKANEASQQKAGGSHTVKAGDTLYSIARSTYGQAGAAAGVEKIKQANGLGSDNVPVGTVLTIPQ |
1Y03 Chain:A ((1-35)) | -----------------------------------------------------------------------------------------------GSMNAPARAAAKTAADALAAAKKTAADAAAAAAAA------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1Y03.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 11602 for 138 contacts (84.1/contact) +
2D Compatibility (PS) -4254 + (NN) -5598 + (LL) 13972
1D Compatibility (HY) 0 + (ID) 650
Total energy: 15072.0 ( 109.22 by residue)
QMean score : 1.137
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