Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MFDWLTNSTAIIIILPVVVFILTMFFSSFKLKKSQRRIMLAADLSTIFLIIAVHFFMIVLFNRSFLLYILLFLFILGIVIVVTAAKKEGEIQFRKILRGYWRLCFFIFALLYVALYLYGIVYSLVLMF
1RL1 Chain:A ((138-229))
SKIKYDWYQTESQVVITL----MIKNVQKNDVNVEFSEKELSALVKLPS---------------GEDYNLKLELLHPIIPEQSTFKVLSTKIEIKLKKPEAVRWE-----------KLEGQG---------
General information:
TITO was launched using:
RESULT:
Template:
1RL1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96124 for 581 contacts (-165.4/contact) +
2D Compatibility (PS) -8842 + (NN) 5654 + (LL) 5868
1D Compatibility (HY) -1600 + (ID) 800
Total energy: -95844.0 ( -164.96 by residue)
QMean score : 0.212
(partial model without unconserved sides chains):
PDB file :
Tito_1RL1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RL1-query.scw
PDB file :
Tito_Scwrl_1RL1.pdb
: