Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGDKIAVIPGTFDPITNGHLDIIERAAKIFDVLYVSVLNNSSKKPLFTIEERMEMIRQVTAHLPNVQVESASGLTVDYAATRGATAIVRGLRAVSDFEYEMQIASMNRTLNADIETFFVMTNTKYSFLSSSMVKEVAQYQGDISELVPEIVNKAVQAKFK
3LCJ Chain:A ((4-156))
-----AVCPGSFDPVTLGHVDIFERAAAQFDEVVVAILVNPAKTGMFDLDERIAMVKESTTHLPNLRVQVGHGLVVDFVRSCGMTAIVKGLRTGTDFEYELQMAQMNKHI-AGVDTFFVATAPRYSFVSSSLAKEVAMLGGDVSELLPEPVNRRLRDRL-
General information:
TITO was launched using:
RESULT:
Template:
3LCJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110510 for 1195 contacts (-92.5/contact) +
2D Compatibility (PS) -16893 + (NN) -9896 + (LL) 212
1D Compatibility (HY) -17200 + (ID) 3900
Total energy: -158187.0 ( -132.37 by residue)
QMean score : 0.538
(partial model without unconserved sides chains):
PDB file :
Tito_3LCJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LCJ-query.scw
PDB file :
Tito_Scwrl_3LCJ.pdb
: