Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---MKKFLKVWSVLTIICMTVVVFGGALVTK----------------TGSADGCGNSWPLCNGQLVRLTDVTPEKLIEF-----MHRMTTGISSIFVIVLAICAWI---YMKNRRETKPLAIIAVLFLIIQALMGMAAVVWGQ----------NPYIMALHFGISIICYASIVLLALMIFEVDRKFDAR--NLVMGTKLRVNIYALTIYTYL----AVYTGALVRHEKASMAVPVWPFENGHFIMPTSVQDYVQYFHRL--AAFILIVWLLYVTWLVFRDYRRYRVLTFS-----------MVLSLVFIALQAVTGALSVYTGVNLYIALAHSLIITML---------FALLCYLCLLASRSKSNRLRIK----------------------- |
| 4QUV Chain:A ((23-427)) | FSWLVLMIALPPLVYYLWICVTYYQGELVFTSDAAAWRRFWSHVAPPTWHAAGLYAAWFLGQAALQVWAPGPTVQGMKLPDGSRLDYRMNGIFSFLFTLAVVFGLVTMGWLDATVLYDQLGPLLTVVNIFTFVFAGFLYFWGPFYDYFMGTALNPRIGSLDLKLFCEARPGMIFWLLMNLSMAAKQYELHGTVTVPMLLVVGFQSFYLIDYFIHEEAVLTTWDIKHEKFGWMLCWGDLVWLPFTYTLQAQYLVHHTHDLPVWGIIAIVALNLAGYAIFRGANIQKHHFRRDPNRIVWGKPAKYIKTKQGSLLLTSGWWGIARHMNYFGDLMIALSWCLPAAFGSPIPYFHIVYFTILLLHREKRDDAMCLAKYGEDWLQYRKKVPWRIVPKIY |
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General information:
TITO was launched using:
| RESULT:
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Template: 4QUV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -273146 for 2224 contacts (-122.8/contact) +
2D Compatibility (PS) -31051 + (NN) -2295 + (LL) 0
1D Compatibility (HY) -24000 + (ID) 2700
Total energy: -333192.0 ( -149.82 by residue)
QMean score : 0.101
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