Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYPQLSKEVAPNEIEAEMITNRGTIRIKLFPEIAPKTVENFV---------THSKNGYYDGLIFHRVIPEFMIQGGD-PDGRGTGGESIWGESFEDEFSTEAFNLRGALSMANAGPNTNGSQFFIVQKPDMPADMLGQMEQAGFPVEVIEAYKQGGTPWLDGRHTVFGHVIEGMDVVDEIANLPTGMQDKPVNDVVIEKINIK
1QNH Chain:A ((15-148))
--------------------SNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFLITLVP---------------------------CPWLDGKHVVFGKVIEGMNVVREM-----------------------
General information:
TITO was launched using:
RESULT:
Template:
1QNH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40481 for 882 contacts (-45.9/contact) +
2D Compatibility (PS) -13108 + (NN) -6153 + (LL) 4836
1D Compatibility (HY) -10400 + (ID) 3600
Total energy: -68906.0 ( -78.12 by residue)
QMean score : 0.500
(partial model without unconserved sides chains):
PDB file :
Tito_1QNH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QNH-query.scw
PDB file :
Tito_Scwrl_1QNH.pdb
: