Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VILIIDHNDSFTYNLYQYFLELQEEVQVVSATSFSLEAFQQLAPEMVVLSPGPGSPEDFPVSLALLG-----KIQVPILGICLGHQIIGHFFGAKVVPANVPVHGKTSVISHTGEGLFADLE--------PAFQVTRYHSLVIDPTTVPVNLKVTAVTEDGVIMGLVHATKPIHSVQFHPEAILSENGHAILKNFVRLGRNVK
3TQI Chain:A ((10-239))
-ILILDFGSQYAQLIARRVREIGVYCELMPC-DIDEETIRDFNPHGIILS---GGPE---------APAFIFEIGCPVLGICYGMQTMAYQLGGKVN-----EFGHAQLRVLNPAFLFDGIEDQVSPQGEPLLDVWMSHGDIV--SELPPGFEATACTDNSPLAAMADFKRRFFGLQFHPEVTHTPQGHRILAHFV-------
General information:
TITO was launched using:
RESULT:
Template:
3TQI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -155856 for 1359 contacts (-114.7/contact) +
2D Compatibility (PS) -16818 + (NN) -1468 + (LL) 684
1D Compatibility (HY) -10800 + (ID) 2250
Total energy: -186508.0 ( -137.24 by residue)
QMean score : 0.434
(partial model without unconserved sides chains):
PDB file :
Tito_3TQI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TQI-query.scw
PDB file :
Tito_Scwrl_3TQI.pdb
: