Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VERVYNFSAGPAVLPVPVLEKVQRELLSYNGSGMSVMELSHRSELFQNILDDAESLIRELMEIPDNYKVLFLQGGASLQFDMVPMNLANGKKAA-YVNTGSWAKKAISEAKKIQGVEVEVIASSEDRNFSYIP-EIPTVSSDVAYLHVTTNNTIEGTAMFDVPD--SAVPVVADMSSNILSSVYDVKKFGLIYAGAQKNIGPAGLTLVIVREDLIGQVE-GLPSMLDFKVQAENDSMYNTPPTFAIYVAKLVFEWIKEQGGVAGIEALNRKKAALLYDYIDQSDFFSSPVEPSARSLTNVPFVTNSAEFDKAFVKEAEANGFENLKGHRSVGGMRASLYNAFPIEGVEALIAFMEKFANARKGGEVRV |
| 1BJO Chain:A ((1-355)) | --QIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAKVTVDGLRAVKPMREWQLSDNAAYMHYCPNETIDGIAIDETPDFGADVVVAADFSSTILSRPIDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSILDYSILNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNRSRMNVPFQLADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEF----------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1BJO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -188326 for 2960 contacts (-63.6/contact) +
2D Compatibility (PS) -38520 + (NN) -21030 + (LL) 912
1D Compatibility (HY) -32000 + (ID) 8800
Total energy: -287764.0 ( -97.22 by residue)
QMean score : 0.511
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