Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRLDKYLKVSR-IIKRRPVAKEVADKGRVKVNGVLAKSSTDLKLNDQVEIRFGNKLLTVKVLEMKDS-TKKEDAIKMYEIINETRIETDEQA
1DM9 Chain:A ((9-96))
VRLDKWLWAARFYKTRA-LAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMA
General information:
TITO was launched using:
RESULT:
Template:
1DM9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10118 for 587 contacts (-17.2/contact) +
2D Compatibility (PS) -8889 + (NN) 3265 + (LL) -140
1D Compatibility (HY) -2400 + (ID) 1350
Total energy: -19632.0 ( -33.44 by residue)
QMean score : 0.624
(partial model without unconserved sides chains):
PDB file :
Tito_1DM9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DM9-query.scw
PDB file :
Tito_Scwrl_1DM9.pdb
: