Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTLEKRFNKYLDRIEVSLIRQFDQSISDIPGMVKLTLGEPDFTTPDHVKEAAKSAIDANQSYYTGMSGLLALRQAAADFAKDKYNLTYNPDCEILVTIGATEALSASLIAILEAGDVVLLPAPAYPGYEPIVNLVGAD--IVEIDTRENDFRLTPEMLETAIIQQGEKLKAVLLNYPTNPTGITYSRQEIASLAEVLKKYDIFVISDEVYSELTYTGQQHVSIAEYLPNQTILINGLSKSHAMTGWRVGLVYAPEAFIAQIIKSHQYMVTAASTISQFAGVEALSVGKNDTL--PMRQGYIKRRDYIIDKMSKLGFKIIKPSGAFYIFAKIPDSYPQDSFKFCQDFAYQQAVAIIPGVAFGKYGE----GYIRLSYAASMEVIETAMARLKVFMESYEG |
1V2D Chain:A ((26-364)) | ------------------------------GAVNLGQGFPSNPPPPFLLEAVRRAL-GRQDQYAPPAGLPALREALAE------EFAVEPES-VVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTP---RTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDEL-YYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMAELPG---WDAFRLVE----EARVALIPASAF--YLEDPPKDLFRFAFCKTEEELHLALERLGRVV----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1V2D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -258390 for 2853 contacts (-90.6/contact) +
2D Compatibility (PS) -36024 + (NN) -16603 + (LL) 3856
1D Compatibility (HY) -22000 + (ID) 5600
Total energy: -334761.0 ( -117.34 by residue)
QMean score : 0.549
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