Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNQLIYTGKAKDIYSTKDENVIRTVYKDQATMLNGARKETIDGKGALNNQISSLIFEKLNMAGVVTHYIEQISKNEQLNKKVDIIPLEVVLRNVTAGSFSKRFGVEEGRVLETPIVEFYYKNDDLNDPFINDEHMKFLGIVNDEEIAYLKGETRRINELLKDWFAQIGLNLIDFKLEFGFDKDGKIILADEFSPDNCRLWDAEGNH-MDKDVFRRDLGSLTDVYQVVLEKLIAL
4O81 Chain:A ((12-231))
----------AKKMIPIDDDKLIME-FKDDATAFDGTKKARFKGKGWLNAQLSVIFFKLLEEHGIKTHFIGVAGGNRLIVEKLDMYPLEVVVRNVVAGSLKKRLPLPEGYELPEPIVELYYKNDELHDPMINYYHAKVLGISLD-EIKKIEEIALKVNEILKDYLAKKGIILVDFKLEFGKDKNGDIVLADEISPDTCRFWDAKTKRSLDKDVFRFDKGDLIEAYKEIYERITGE
General information:
TITO was launched using:
RESULT:
Template:
4O81.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65823 for 1680 contacts (-39.2/contact) +
2D Compatibility (PS) -23405 + (NN) -4975 + (LL) 880
1D Compatibility (HY) -22000 + (ID) 5250
Total energy: -120573.0 ( -71.77 by residue)
QMean score : 0.449
(partial model without unconserved sides chains):
PDB file :
Tito_4O81.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4O81-query.scw
PDB file :
Tito_Scwrl_4O81.pdb
: