Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIYDHLLNLTHYKDINPNLDLAIDYLLSHDLRNLDIGTYHISPE-VILMVQSNQLSESFDHIFEYHKKYLDIHYVIEGHEVIKLGK-GDKV-EVEEYL--GDIGFIKCSE-ETSFDLRDNYIAFFFPEEAHQPNGMGSLGNYVKKGVLKVLMA
1S4C Chain:A ((1-153))
MIISSLTNPNFKVGLPKVIAEVCDYLNTLDLNALENGRHDIN-DQIYMNVMEPETAEPSSKKAELHHEYLDVQVLIRGTENIEVGATYPNLSKYEDYNEADDYQLCADIDDKFTVTMKPKMFAVFYPYEPHKPCCV----EKIKKLVVKVPVK
General information:
TITO was launched using:
RESULT:
Template:
1S4C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81447 for 1029 contacts (-79.2/contact) +
2D Compatibility (PS) -15036 + (NN) 1966 + (LL) -336
1D Compatibility (HY) -10800 + (ID) 1900
Total energy: -107553.0 ( -104.52 by residue)
QMean score : 0.258
(partial model without unconserved sides chains):
PDB file :
Tito_1S4C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S4C-query.scw
PDB file :
Tito_Scwrl_1S4C.pdb
: