Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKANQLIAAIFDVNNTFMQGCNVVFDLALLNLLFMITCLPLVTIGAAKISLYRTLWQKLEGDQTNLLILYIKHLKKEWFQGMLLGLVELSILVVIIFDLTILHYQIGFIVSFLKITCYAFLLLTVMTSIYLFPMAARY-EMSLLDTVKKSFIMACL-NLKWTGVLMFLLIMTWFIMVQSSL-LFMLTVSAIFIFAYTAFAYFKIIILQKQFAYFSKQQGDYQ
1DYO Chain:A ((5-160))
-PDAGYYYHDTFEGSVG-----------------------QWTARGPAEVLLSG------RTAYKGSESLLVRNRTAAW-NGAQRALNPRTFV-------PGNTYCFSVVASFIEGA----------------SSTTFCMKLQYVDGSGTQRYDTIDMKTVGPNQWVHLYNPQYRIPSDATDMYVYVETAD----DTINFYIDEAIGAVAGTVI---------
General information:
TITO was launched using:
RESULT:
Template:
1DYO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -178031 for 1190 contacts (-149.6/contact) +
2D Compatibility (PS) -15809 + (NN) 5576 + (LL) 7660
1D Compatibility (HY) 400 + (ID) 850
Total energy: -181054.0 ( -152.15 by residue)
QMean score : 0.056
(partial model without unconserved sides chains):
PDB file :
Tito_1DYO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DYO-query.scw
PDB file :
Tito_Scwrl_1DYO.pdb
: