Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVPKRVKHRREFRGKMRGEAKGGKEVSFGEYGLQATTSHWITNRQIEAARIAMTRYMKRGGKVWIKIFPHKSYTAKAIGVRMGSGKGAPEGWVAPVKRGKVMFEIAGVSEEVAREALRLASHKLPVKCKFVKREAE
3CF5 Chain:J ((6-136))
----KRTKFRKQFRGRMTGDAKGGDYVAFGDYGLIAMEPAWIKSNQIEACRIVMSRHFRRGGKIYIRIFPDKPVTKKPAETRMGKGKGAVEYWVSVVKPGRVMFEVAGVTEEQAKEAFRLAGHKLPIQTKMVKREVY
General information:
TITO was launched using:
RESULT:
Template:
3CF5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31967 for 899 contacts (-35.6/contact) +
2D Compatibility (PS) -13989 + (NN) -4482 + (LL) 436
1D Compatibility (HY) -10800 + (ID) 3900
Total energy: -64702.0 ( -71.97 by residue)
QMean score : 0.315
(partial model without unconserved sides chains):
PDB file :
Tito_3CF5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CF5-query.scw
PDB file :
Tito_Scwrl_3CF5.pdb
: