Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKPTRKRRVKKNIESGVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSRKSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKGPGSGRESAIRALAAAGLEVTAIRDVTPVPHNGARPPKRRRV
1IBK Chain:K ((11-126))
----------KRQVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGYKGSRKGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGTGAGREQAIRALQASGLQVKSIVDDTPVPHNGCRPKKKFRK
General information:
TITO was launched using:
RESULT:
Template:
1IBK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41421 for 895 contacts (-46.3/contact) +
2D Compatibility (PS) -13000 + (NN) -7112 + (LL) 884
1D Compatibility (HY) -7200 + (ID) 3450
Total energy: -71299.0 ( -79.66 by residue)
QMean score : 0.613
(partial model without unconserved sides chains):
PDB file :
Tito_1IBK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IBK-query.scw
PDB file :
Tito_Scwrl_1IBK.pdb
: