Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALSKLDNLYMAVVADHSKHPHHHGFL-EGVEQVQLNNPTCGDVISLSVKFDGNIISDIAFAGNGCTISTASSSMMTDAVIGKTKEEALQLADVFSKMVQGDQNPKQEKLGDAEFLAGVSKFPQRIKCATLSWNALRKAIERDNQAEL
2QQ4 Chain:C ((1-138))
--MSVLDELYREILLDHYQSPRNFGVLPQATKQAGGMNPSCGDQVEVMVLLEGDTIADIRFQGQGCAISTASASLMTEAVKGKKVAEALELSRKFQAMVV-EGAPPDPTLGDLLALQGVAKLPARVKCATLAWHALEEALR-------
General information:
TITO was launched using:
RESULT:
Template:
2QQ4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75361 for 1126 contacts (-66.9/contact) +
2D Compatibility (PS) -14474 + (NN) -8759 + (LL) 668
1D Compatibility (HY) -10800 + (ID) 3150
Total energy: -111876.0 ( -99.36 by residue)
QMean score : 0.645
(partial model without unconserved sides chains):
PDB file :
Tito_2QQ4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QQ4-query.scw
PDB file :
Tito_Scwrl_2QQ4.pdb
: