Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALAKIVYASMTGNTEEIADIVADKLRDLGLDVEVEECTMVDAAD-FEDADIAIVATYTYGDG--DLPDEIVDFYEDLAEVDLSGKVYGVVGSGDTFYDYFCKSVDEFEAQFALTGAQKGADCVKVDLAAEDEDIENLEAFAEEIASKLN
1F4P Chain:A ((3-126))
---ALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGDDSIELQDDFIPLFDSLEETGAQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGAEIVQDGLRIDGDPRAARDDIVGWAHDVRGAI--
General information:
TITO was launched using:
RESULT:
Template:
1F4P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73030 for 961 contacts (-76.0/contact) +
2D Compatibility (PS) -13206 + (NN) -5942 + (LL) 848
1D Compatibility (HY) -6800 + (ID) 2100
Total energy: -100230.0 ( -104.30 by residue)
QMean score : 0.603
(partial model without unconserved sides chains):
PDB file :
Tito_1F4P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1F4P-query.scw
PDB file :
Tito_Scwrl_1F4P.pdb
: