Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSDVVEKQTAKSFIMNVLNGLALGTVIVLIPGAILGELMKALLPMWSGFATLIAATAVATSMMGLVIGIMVGLNFKFNPIQSASLGLAVMFAGGAATFLKGAIMLKGTGDIINMG---ITAALGVLLIQFLSDKTKSFTLIVIPTVTLLLVGGVGHVLLPYVKMITTMIGQGIASLLGLQPVLMSILIAMIFCFL-IVSPITTVGIALAISLSGIGSGAANLGICAASFGLCMAGWSVNSKGTALAHVLGSPKISMANVLAKPKIMLPMISSAAILGILGALFNIQGTPASAGFGISGLIGPINALNLAKGGWSVMNMLLIIIIFVAAPIILNFIFNYLFIKVLKIIDPMDYKLDI |
4I5J Chain:A ((8-279)) | ---NHHDDASKFICLLAKPNCSS------LEQEDFIPLLQDVVDTHPGLTFLKDAPEFHSRYITTVIQRIF---YTVNRSWSGKITSTEIRK---SNFLQTLALLEEEEDINQITDYFSYEHFYVIYCKFWELDTDHDLYISQADLSRYNDQASSSRIIERI-FSGAVTKEGRMS--------YADFVWFLISEEDKRNPTSIEYWFRCMDVDGDG-------------------------------VLSMYELEYFYEEQCERMEAMGIEPLPFHDLLCQMLDLVKPAVD---------GKITLRDLKRCR--------------MAHIFYDTFFNLEKYLDH------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4I5J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -291831 for 1971 contacts (-148.1/contact) +
2D Compatibility (PS) -27058 + (NN) -5953 + (LL) 6120
1D Compatibility (HY) -9200 + (ID) 1700
Total energy: -329622.0 ( -167.24 by residue)
QMean score : 0.262
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