Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNNSAANIRSFELALLFLLVFVAVYFVYLAVRDFKMSKNIRLLNWKVRDLIAGNYSDSILIQGDADLVELGESLNDLSDVFRMAHDNLEQEKNRLASILTYMTDGVLATDRSGKIVMINETAQQQFNLAYDEALSMNIVDM-----LGSGSPYSFQDLVSKTPEVVLNRRDENGEFVTLRIRFALNRR-ESGFISGLVAVSHDATEQEKEERERRL---------FVSNVSHELRTPLTSVKSYLEALDEGALNEEVAPSFIKVSLDETNRMMRMISDLLSLSRIDNEVTHLDVEMTNFTAFMTSILNRFDQIRNQKTVTGKVYEIVRDYPLKSIWVEIDTDKMTQVIDNILNNAVKYSPDGGKITVNLRTTKTQMILSISDQGLGIPKKDLPLIFDRFYRVDKARSRQQGGTGLGLSIAKEIVK-QHKGFIWAKSEYGKGSTFTIVLPYDKDAVTYEEWEDVED |
3A0R Chain:A ((9-343)) | ---------------------------------------------------------------------------------------------FSESILESLETAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDLPDFEEIGSVAESVFEN---KEP-VFLNFYKFGERY--FNIRFSPFRNAKTQLLEGVIITIDDVTELYKYEEERKRRERLSILGEMTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSK--------ER-VLEFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNEDLRVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFF------TT------LGLSICRKIIEDEHGGKIWTENREN-GVVFIFEIPKTPEKR---------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3A0R.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -107795 for 2144 contacts (-50.3/contact) +
2D Compatibility (PS) -32203 + (NN) -3900 + (LL) 10180
1D Compatibility (HY) -18000 + (ID) 4050
Total energy: -155768.0 ( -72.65 by residue)
QMean score : 0.356
|
|
|