Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSNQHIEELNDQQIVRREKMAALTEQGIDPFGKRFERTATSGQLNEKYADKSKEDLHDIEETATIAGRLMTKRGKGK-VGFAHIQDREGQIQIYVRKDSVGEENYEIF----KKADLGDFLGVEGQVMRTDMGELSIKATHITHLSKALRPLPEKFHGLTDIETIYRKRHLDLISNRDSFDRFVTRSKIISEIRRFMDSNGFLEVETPVLHNEAGGASARPFITHHNAQDIDMVLRIATELHLKRLIVGGMERVYEIGRIFRNEGMDATHNPEFTSIEAYQAYADYQDIMDLTEGIIQHVTKTVKGDGP-----INYQGTEIKINEPFKRVHMVDAVKEITGIDFWKEMTLEEAQALAQEKNVPLE-----KHFTTVGHIINAFFEEFVEDTLIQP---TFVFGHPVEVSPLAKKNDTDPR-----FTDRFELFIMTKEYANAFTELNDPIDQLSRFEAQ----------------------------------ASAKELGDDEATGVDYDYVEALEYGMPPTGGLGIGIDRLCMLLTDTTTIRDVLLFPTMK |
| 4UP9 Chain:A ((28-568)) | --------------------------GHNPWPHKFNVSITVPEFIAKYSGLEKSQVSD--DIVSVAGRVLSKRSSSSALMFIDLHDSQTKLQIMLNKSAY--ENKEDFVSLTKMIYRGDICGFTGHPTRTKTGELSLIPISGMILSPCLHMLPSMHYGLGDQETRFRKRYLDLIVNPESVKNFVLRTKVVKAVRKYLDDKGFLEVETPILNTIPGGATARPFITHHNQLDIQMYMRIAPELYLKELVVGGINRVYEIGRLFRNEGIDQTHNPEFTTCEFYMAYADYNDIMKMTEELLGNMVKDITGGSTKLEIK-----------------------------------------------KMVLDFTAPFKRISYV-HALEEKFGEKIPRPLDGPEALTFLKKQAIRFNAICAEPQTTARVMDKLFGDLIEVDLVQPTFVCDQPQLMSPLAKYHRSEPELTERFELFILKREIANAYTELNNPIVQRSNFEQQAKDKA-------LVDEVFLDAIEHAFPPTGGWGLGIDRLAMLLADVDNIKEVILFPTMR |
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General information:
TITO was launched using:
| RESULT:
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Template: 4UP9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -99365 for 2819 contacts (-35.2/contact) +
2D Compatibility (PS) -42511 + (NN) -4694 + (LL) 7232
1D Compatibility (HY) -36800 + (ID) 8700
Total energy: -184838.0 ( -65.57 by residue)
QMean score : 0.337
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