Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKTRSKLAAGFLTLMSVATLAACSGKTSNGTNVVTMKGDTITVSDFYDQVKTS---------------KAAQQSMLTLILSRVFDTQ---YGDKVSDKKVSEAYNKTAKGYG---NSFSSALSQAGLTPEGYKQQIRTTMLVEYAVKEAA--KKELTEANYKEAYKNYTP-ETSVQVIKLDAE------------------------------------------------------------------------------------------------------------------------DKAKSVLKDVKADG-ADFAKIAKEKTTATD---KKVEY-KFDSAGTSLPKEVMSAAFKLDKNGVSDVVSTVDSTTYKTSYYIIKVTDKTEKKSDWKSYKNRLKEVILKDKTSDRSFQNKVISKALEKANVKIKDKAFAGILSQYATTSGSSSLKK |
| 1M5Y Chain:A ((25-427)) | ----------------------------VDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQV--TELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIK-SGKTTFAAAAKEFSQDPGSANQGGDLGWATP--DIFDPAFRDALTRLNKGQMSAPVHSSF------GWHLIELLDTRNVD--------RAYRMLMNRKFSE--EAASWMQEQRASAYVKILS--------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1M5Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -26337 for 1351 contacts (-19.5/contact) +
2D Compatibility (PS) -25604 + (NN) -8263 + (LL) 3956
1D Compatibility (HY) -10400 + (ID) 2350
Total energy: -68998.0 ( -51.07 by residue)
QMean score : 0.599
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