Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKINFPILDEPLVLSNATILTIEDVSVYSSLVKHFYQYD-VDEHLKLFDDKQKSLKATELMLVTDILGYDVNSAPILKLIHGDLENQFNEKPEVKSMVEKLAATITELIAFECLENELDLEYDEITILELIKALGVKIETQSDTIFEKCFEIIQVYHYLTKKNLLVFVNSGAYLTKDEVIKLCEYINLMQKSVLFLEPRRLYDLPQYVIDKDYFLIGENMV
3S5U Chain:A ((3-219))
--RVNFSLLEEPIEIEKATFLTIKDVQSFAHLVKLI-YQYD--NELKL----QKGLKPTELFVVTDILGYDVNSAATLKLIYGDLEAQLNDKPEVKSMIEKLTGTISQLIGYELLEHEMDLEEDGIIVQELFKALGIKIETTSDTIFEKVMEITQVHRYLSKKKLLIFINACTYLTEDEVQQVVEYISLNNVDVLFLEQRVVQNRFQYILDENFYLSYEKA-
General information:
TITO was launched using:
RESULT:
Template:
3S5U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129000 for 1374 contacts (-93.9/contact) +
2D Compatibility (PS) -22540 + (NN) -3976 + (LL) 872
1D Compatibility (HY) -27200 + (ID) 6000
Total energy: -187844.0 ( -136.71 by residue)
QMean score : 0.512
(partial model without unconserved sides chains):
PDB file :
Tito_3S5U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3S5U-query.scw
PDB file :
Tito_Scwrl_3S5U.pdb
: