Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKLIKYILSFENIIAIFFIVLFGLLLIRIEPVNNSVYSIISGIAIDKVIIVIISSFVIAIFSAFFIIDILEIIFHLKIDSLFLIAYLFFAISLGFGLLKVLTESQFSLLSAFIAFPLFLIFPKLFEKIVNNRKINQKDNKNQK-------
4A9A Chain:C ((214-338))
-----------------------------LEKQPKITLEEFIETERGKLDKSKLTPITIANFAQWKKDHVIAKINAEKKLSS----------------KRKPTGREIILKMSAEAWDLTEFTDALKKADHQDDGGIKDYGDGSNPTFDIKK
General information:
TITO was launched using:
RESULT:
Template:
4A9A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19771 for 368 contacts (-53.7/contact) +
2D Compatibility (PS) -9964 + (NN) 794 + (LL) 5412
1D Compatibility (HY) 5600 + (ID) 650
Total energy: -18579.0 ( -50.49 by residue)
QMean score : 0.205
(partial model without unconserved sides chains):
PDB file :
Tito_4A9A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4A9A-query.scw
PDB file :
Tito_Scwrl_4A9A.pdb
: