Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLLEKINETRDFLQAKGVTAPEFGLILGSGLGELAEEIENPIVVDYADIPNWGQSTVVGHAGKLVYGDLSGRKVLALQGRFHFYEGNTMEIVTFPVRIMRALACHSVLVTNAAGGI--GYGPGTLMLIKDHINV---IGTNPLIGENLEEFGPRFPDMSDAYTATYRQKAH----QIAEKQNIKLEEGVYLGVSGPTYETPAEIRAFQTMGAQAVGMSTVPEVIVAAHSGLKVLGISAITN---FAAGFQSELNHEEVVEVTQRIKEDFKGLVKSLVAEL
1V48 Chain:A ((8-282))
----EDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPES------GRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGLNPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQMGEQR--ELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMDYE----------------AAQKLEQFVSLLMASI
General information:
TITO was launched using:
RESULT:
Template:
1V48.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -154415 for 1986 contacts (-77.8/contact) +
2D Compatibility (PS) -25501 + (NN) -5216 + (LL) 2816
1D Compatibility (HY) -26800 + (ID) 5850
Total energy: -214966.0 ( -108.24 by residue)
QMean score : 0.540
(partial model without unconserved sides chains):
PDB file :
Tito_1V48.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V48-query.scw
PDB file :
Tito_Scwrl_1V48.pdb
: