Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVMKIIELKEATVQVSNGLAEMKTIL--DHVNLSIYEHDFITILGGNGAGKSTLFNVIAGTLMLSGGNIYIMGQDVTNLPAEKRAKYLSRVFQDPKMGTAPRMTVAENLLVA-KFRGEKRPLVPRKITNYTEEFQKLIARTGNGLDRHLETPTGLLSGGQRQALSLLMATLKKPNLLLLDEHTAALDPRTSVSLMGLTDEFIKQDSLTALMITHHMEDALKYGNRILVMKDGKIVRDLNQAQKNKMAIADYYQLFD
3PUV Chain:A ((2-214))
----------ASVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERG--VGMVFQ--SYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQ-----LAHLLDRKPKA----LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFI
General information:
TITO was launched using:
RESULT:
Template:
3PUV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -136773 for 1625 contacts (-84.2/contact) +
2D Compatibility (PS) -22201 + (NN) -3729 + (LL) 2072
1D Compatibility (HY) -16800 + (ID) 3100
Total energy: -180531.0 ( -111.10 by residue)
QMean score : 0.491
(partial model without unconserved sides chains):
PDB file :
Tito_3PUV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PUV-query.scw
PDB file :
Tito_Scwrl_3PUV.pdb
: