Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIDYIDLALTYGGFTSLDKVYLEKKLDGLSKQQRLDFITPPPSVINAYFAEIYQKQGPEAATDYYFDLSKALGLFPKHLSFDEEKPFIRLNLSGKSFGFAYLNDQEEASVFSEVKEVITPQLLLEIAQIFPQYKVYQDRSGIRMAKIDFDETESQNITPETSLLGNVLQLKKDIIKITSF---NQEELLELVKTKSGKYYYSSQGRESVIYIDTKSTN |
3KNW Chain:A ((26-63)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------LVLRKGFVGVGLQEILKTSGVPKGSFYHYFESKEAFGCELLKHYI |
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General information:
TITO was launched using:
| RESULT:
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Template: 3KNW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -10026 for 178 contacts (-56.3/contact) +
2D Compatibility (PS) -3553 + (NN) 253 + (LL) 11744
1D Compatibility (HY) -1600 + (ID) 300
Total energy: -3482.0 ( -19.56 by residue)
QMean score : 0.332
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