Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRKVRRHFTDDFKQQIVDLYNVGRKRSSLIKEYELTPSTFDKWVRQAKTTGSFKSVDNLTDEQRELIELRKHNKELEMQLDILKQAAVIMAQKGK
1PDN Chain:C ((15-62))
-----GRPLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEIENRIEEYKRSSPGMFSWEIREKLIR
General information:
TITO was launched using:
RESULT:
Template:
1PDN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17607 for 282 contacts (-62.4/contact) +
2D Compatibility (PS) -4950 + (NN) 1040 + (LL) 536
1D Compatibility (HY) -3200 + (ID) 400
Total energy: -24581.0 ( -87.17 by residue)
QMean score : 0.707
(partial model without unconserved sides chains):
PDB file :
Tito_1PDN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PDN-query.scw
PDB file :
Tito_Scwrl_1PDN.pdb
: