Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIVVPVMPRSLEEAQEIDLSKFDSV-DIIEWRADAL----PKDDIINVAPAIFEKFAGHEIIFTLRTTREGGNIVLSDAEYVELIQKINSIYNPDYIDFEYFSHKEVFQEMLEFPN-----LVLSYHNFQETP--ENIMEIFSELTALAPRVVKIAVMPKNEQDVLDVMNYTRGFKTINPDQVYATVSMSKIGRISRFAGDVTGSSWTFAYLDSSIAPGQITISEMKRVKALLDAD
1QFE Chain:A ((17-249))
-KIIVSLMGRDINSVKAEALAYREATFDILEWRVDHFMDIASTQSVLTAARVIRDAMPDIPLLFTFRSAKEGGEQTITTQHYLTLNRAAIDSGLVDMIDLELFTGDADVKATVDYAHAHNVYVVMSNHDFHQTPSAEEMVSRLRKMQALGADIPKIAVMPQSKHDVLTLLTATLEMQQHYADRPVITMSMAKEGVISRLAGEVFGSAATFGAVKQASAPGQIAVNDLRSVLMILHNA
General information:
TITO was launched using:
RESULT:
Template:
1QFE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126543 for 1819 contacts (-69.6/contact) +
2D Compatibility (PS) -24711 + (NN) -13531 + (LL) 208
1D Compatibility (HY) -16000 + (ID) 3450
Total energy: -184027.0 ( -101.17 by residue)
QMean score : 0.508
(partial model without unconserved sides chains):
PDB file :
Tito_1QFE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QFE-query.scw
PDB file :
Tito_Scwrl_1QFE.pdb
: