Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAIDKLVKASHLIDMNDIIREGNPTLRKVAEEVTFPLSEKEEI--LGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKNPFAVKEGLLILE
1VEY Chain:A ((5-169))
------------------ILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAE------------GVGLAAPQIGILKQIVVVGSEDNERYPGTPDVP----ERIILNP-VITPLTKDTS-GFWEGCLSVP-GMRGYVERPNQIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDTKLFGFNETLDS--
General information:
TITO was launched using:
RESULT:
Template:
1VEY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52355 for 1248 contacts (-42.0/contact) +
2D Compatibility (PS) -17410 + (NN) -6927 + (LL) 3184
1D Compatibility (HY) -15200 + (ID) 3050
Total energy: -91758.0 ( -73.52 by residue)
QMean score : 0.430
(partial model without unconserved sides chains):
PDB file :
Tito_1VEY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VEY-query.scw
PDB file :
Tito_Scwrl_1VEY.pdb
: