Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFINNYTLKIGNRILLENTNLDFEEGEINHLLGRNGSGKSQLAKDFIINRGNYFSNDIY------EDT--------LIISSYSNLPSDVTINDLERTIPWKLSKEIYQLLN--INQISKTVKL--------KQLSDGQKQKVKLLVLLSLDKHIIILDEITNALDKKSVDEINVFLQNYIQYYPEKIIINISHDINNIRSLKGNYFLIDNQKICKVDTLDDAISWYLGE
1Q1B Chain:A ((6-215))
--LQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLR-MIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENM--SFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADR
General information:
TITO was launched using:
RESULT:
Template:
1Q1B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88307 for 1382 contacts (-63.9/contact) +
2D Compatibility (PS) -19543 + (NN) -4668 + (LL) 328
1D Compatibility (HY) -13600 + (ID) 2400
Total energy: -128190.0 ( -92.76 by residue)
QMean score : 0.376
(partial model without unconserved sides chains):
PDB file :
Tito_1Q1B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Q1B-query.scw
PDB file :
Tito_Scwrl_1Q1B.pdb
: