Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRYTGPSWKQSRRLGLSLTGTGKE-------LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRFSYGLGEKQFRNLFVQATKAKEGTLGFNFMVLLERRLDNVVYRLGLATTRRQARQFVNHGHILVDGKRVDIPSYRVTPGQVISVREKSMKVPAILEAVEATLGRPA--FVSFDAEKLEGSLTRLPERDEINPEINEALVVEFYNKML
2UUB Chain:D ((2-209))
-GRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLFEEASK-KKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVNEQLVIEFYSR--
General information:
TITO was launched using:
RESULT:
Template:
2UUB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61751 for 1472 contacts (-42.0/contact) +
2D Compatibility (PS) -21665 + (NN) -14211 + (LL) 736
1D Compatibility (HY) -15200 + (ID) 5150
Total energy: -117241.0 ( -79.65 by residue)
QMean score : 0.538
(partial model without unconserved sides chains):
PDB file :
Tito_2UUB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2UUB-query.scw
PDB file :
Tito_Scwrl_2UUB.pdb
: