Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANPISIDTEMITLGQFLKLADVIQSGGMAKWFLSEHEVLVNDEPDNRRGRKLYVGDVVEIEGFGSFQVVN
1KSK Chain:A ((2-56))
---------SHMRLDKFIAQQLGV-SRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNP------
General information:
TITO was launched using:
RESULT:
Template:
1KSK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11299 for 353 contacts (-32.0/contact) +
2D Compatibility (PS) -5750 + (NN) -1348 + (LL) 1136
1D Compatibility (HY) -1600 + (ID) 550
Total energy: -19411.0 ( -54.99 by residue)
QMean score : 0.280
(partial model without unconserved sides chains):
PDB file :
Tito_1KSK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KSK-query.scw
PDB file :
Tito_Scwrl_1KSK.pdb
: