Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNTAPFIAIEGPIGAGKTTLATMLSQ-KFGFPMINEIV-----------EDNPYLDKFYDNIKEWSFQLEMFFLCHRYK--------QLEDTSDHFLKKGQPVIADYHIYKNVIFAERTLSPHQLEKYKKIYHLLTDDLPKP---NFIIYIKASLPTLLHRIEKRGRPFEKKIETSYLEQLISDYEV-----AIKQLQEADPELTVLTVDGDSKDFVLNKSDFERIAAHVKELIV
4L5B Chain:A ((44-277))
------ISIEGNIAAGKSTFVNILKQLSEDWEVVPEPVARWSNLTMEQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESESMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVN-EDF---KDKYESLVEKVKEFL-
General information:
TITO was launched using:
RESULT:
Template:
4L5B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96532 for 1419 contacts (-68.0/contact) +
2D Compatibility (PS) -20741 + (NN) -10881 + (LL) 768
1D Compatibility (HY) -17600 + (ID) 2850
Total energy: -147836.0 ( -104.18 by residue)
QMean score : 0.527
(partial model without unconserved sides chains):
PDB file :
Tito_4L5B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4L5B-query.scw
PDB file :
Tito_Scwrl_4L5B.pdb
: