Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
METNNHFFYVVKCKDNSWYAGYTNDLHKRVKTHNDGKGAKYTKVRRPVE-LIFAE--------SFSTKREAMQAEYYFKKLTRKKKELY-IEEKRN-SKEAVYVKAPNEL-------
3GHJ Chain:A ((5-120))
IKGLFEVAVKVKNLEKS-SQFYTEILGFEAGLLDSARRWNFLWVSGRAGMVVLQEEKENWQQQHFSFRVEKSEIEPLKKALESKGVSVHGPVNQEWMQAVSLYFADPNGHALEFTAL
General information:
TITO was launched using:
RESULT:
Template:
3GHJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 23715 for 605 contacts (39.2/contact) +
2D Compatibility (PS) -10497 + (NN) -761 + (LL) 156
1D Compatibility (HY) 800 + (ID) 450
Total energy: 12963.0 ( 21.43 by residue)
QMean score : 0.209
(partial model without unconserved sides chains):
PDB file :
Tito_3GHJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GHJ-query.scw
PDB file :
Tito_Scwrl_3GHJ.pdb
: