Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKVVKVVKLQIPAGKANPAPPVGPALGQAGVNIMGFCKEFNARTAD-QAGLIIPVEISVYEDRSFTFITKTPPAAVLLKKAAGIESGSGEPNRNKVATVKRDKVREIAETKMPDLNAADVEAAMRMVEGTARSMGIVIED
5GAD Chain:J ((8-141))
-------YVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVYADRSFTFVTKTPPAAVLLKKAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGADIEAMTRSIEGTARSMGLVVE-
General information:
TITO was launched using:
RESULT:
Template:
5GAD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67138 for 961 contacts (-69.9/contact) +
2D Compatibility (PS) -15106 + (NN) -14079 + (LL) 852
1D Compatibility (HY) -12800 + (ID) 4500
Total energy: -112771.0 ( -117.35 by residue)
QMean score : 0.610
(partial model without unconserved sides chains):
PDB file :
Tito_5GAD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5GAD-query.scw
PDB file :
Tito_Scwrl_5GAD.pdb
: