Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRRIDPSKLELEERLVTVNRVAKVVKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPEAIRKAVEDAKKNLIEVPMVGTTIPHEIIGRFGAGNILLKPASEGTGVIAGGPVRAVLELAGVADILSKSLGSNTPINMIRATLQGLSELKRAEDVAKLRGKSVEELLG
1J5E Chain:E ((4-151))
---------DFEEKMILIRRTARMQAGGRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAVQKAGYYARRNMVEVPLQNGTIPHEIEVEFGASKIVLKPAAPGTGVIAGAVPRAILELAGVTDILTKELGSRNPINIAYATMEALRQLRTKADVERLR---------
General information:
TITO was launched using:
RESULT:
Template:
1J5E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74928 for 1161 contacts (-64.5/contact) +
2D Compatibility (PS) -15574 + (NN) -1886 + (LL) 1052
1D Compatibility (HY) -13600 + (ID) 4150
Total energy: -109086.0 ( -93.96 by residue)
QMean score : 0.515
(partial model without unconserved sides chains):
PDB file :
Tito_1J5E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1J5E-query.scw
PDB file :
Tito_Scwrl_1J5E.pdb
: